Package: S4Vectors 0.45.0
Hervé Pagès
S4Vectors: Foundation of vector-like and list-like containers in Bioconductor
The S4Vectors package defines the Vector and List virtual classes and a set of generic functions that extend the semantic of ordinary vectors and lists in R. Package developers can easily implement vector-like or list-like objects as concrete subclasses of Vector or List. In addition, a few low-level concrete subclasses of general interest (e.g. DataFrame, Rle, Factor, and Hits) are implemented in the S4Vectors package itself (many more are implemented in the IRanges package and in other Bioconductor infrastructure packages).
Authors:
S4Vectors_0.45.0.tar.gz
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S4Vectors.pdf |S4Vectors.html✨
S4Vectors/json (API)
NEWS
| # Install 'S4Vectors' in R: |
| install.packages('S4Vectors', repos = c('https://mojaveazure.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bioconductor/s4vectors/issues
On BioConductor:S4Vectors-0.43.2(bioc 3.20)S4Vectors-0.42.1(bioc 3.19)
infrastructuredatarepresentationbioconductor-packagecore-package
Last updated 12 hours agofrom:50a54ed878. Checks:OK: 1 WARNING: 1 ERROR: 7. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 29 2024 |
| R-4.5-win-x86_64 | ERROR | Oct 29 2024 |
| R-4.5-linux-x86_64 | WARNING | Oct 29 2024 |
| R-4.4-win-x86_64 | ERROR | Oct 29 2024 |
| R-4.4-mac-x86_64 | ERROR | Oct 29 2024 |
| R-4.4-mac-aarch64 | ERROR | Oct 29 2024 |
| R-4.3-win-x86_64 | ERROR | Oct 29 2024 |
| R-4.3-mac-x86_64 | ERROR | Oct 29 2024 |
| R-4.3-mac-aarch64 | ERROR | Oct 29 2024 |
Exports:.Call2%in%activeactive<-aggregateaggregate.VectoranyDuplicatedanyDuplicated.NSBSanyDuplicated.RleanyDuplicated.Vectorappendas.character.LLintas.data.frameas.data.frame.DataFrameas.data.frame.Hitsas.data.frame.Vectoras.envas.factoras.integer.LLintas.listas.list.Rleas.list.SimpleListas.list.TransposedDataFrameas.list.Vectoras.LLintas.logical.LLintas.matrixas.matrix.Vectoras.numeric.LLintas.tableas.vector.RlebindCOLSbindROWSbreakTiesbycbindcbind_mcols_for_displaycbind.DataFramecbind.Listcbind.RectangularDataclassNameForDisplaycoercecolnamescolnames<-combineColscombineRowscombineUniqueColscomplete.casescoolcatcorcountLnodeHitscountMatchescountQueryHitscountRnodeHitscountSubjectHitscovDataFrameDataFrameFactordecodediff.Rledo.calldroplevelsdroplevels.Factordroplevels.Listdroplevels.Rleduplicatedduplicated.DataFrameduplicated.VectorduplicatedIntegerPairsduplicatedIntegerQuadselementMetadataelementMetadata<-elementNROWSelementTypeendendoapplyevalevalSeparatelyexpandexpand.gridextractCOLSextractROWSFactorFactorToClassFilterFilterMatrixfilterRulesFilterRulesfindMatchesfindRunfirstfirst<-foldfromget_showHeadLinesget_showTailLinesgetListElementgrepgreplheadhead.LLinthead.RectangularDatahead.VectorHitsHitsListhorizontal_slot_namesIintersectintersect.Vectoris.LLintis.unsortedisConstantisEmptyisRedundantHitisSelfHitisSequenceisSingleIntegerisSingleNumberisSingleNumberOrNAisSingleStringisSingleStringOrNAisSortedisStrictlySortedisTRUEorFALSElapplylevelslevels.RleListLLintmake_zero_col_DFramemakeClassinfoRowForCompactPrintingmakeNakedCharacterMatrixForDisplaymakePrettyMatrixForCompactPrintingmatchmatchIntegerPairsmatchIntegerQuadsmcolsmcols<-mean.Rlemedian.RlemendoapplymergemergeROWSmetadatametadata<-mstackNA_LLint_na.excludena.omitncharncolnew2nLnodennodenormalizeDoubleBracketSubscriptnormalizeSingleBracketReplacementValuenormalizeSingleBracketSubscriptnRnodenrownrunNSBSOpsorderorderIntegerPairsorderIntegerQuadsPairsparallel_slot_namesparallelVectorNamesparamspcpcomparepcompareRecursivelyprintAtomicVectorInAGridquantile.RlequeryHitsqueryLengthrankrbindrbind.RectangularDatarecycleArgrecycleCharacterArgrecycleIntegerArgrecycleLogicalArgrecycleNumericArgReducerelistToClassremapHitsrenamerep.intreplaceCOLSreplaceROWSrevrev.Rlerev.VectorrevElementsRlerownamesROWNAMESrownames<-ROWNAMES<-runLengthrunLength<-runmeanrunqrunsumrunValuerunValue<-runwtsumsafeExplodesameAsPreviousROWsapplysdsecondsecond<-selectHitsSelfHitsselfmatchselfmatchIntegerPairsselfmatchIntegerQuadsset_showHeadLinesset_showTailLinessetdiffsetdiff.Vectorsetequalsetequal.VectorsetListElementsetMethodssetValidity2shiftApplyshowshowAsCellSimpleListsortsort.DataFramesort.Listsort.Rlesort.VectorspacesplitsplitAsListstackstartsubjectHitssubjectLengthsubsetsubset.VectorsubsetByFiltersubstrsubstringsummarySummarysummary.Hitssummary.Rlesummary.Vectorsvn.timett.DataFramet.Hitst.HitsListt.TransposedDataFrametailtail.LLinttail.RectangularDatatail.VectortotoListOfIntegerVectorstransformtransform.DataFrametransform.Vectorunfactorunionunion.Vectoruniqueunique.DataFrameunique.VectorunnameunstrsplitupdateObjectvaluesvalues<-varvertical_slot_nameswidthwindowwindow.LLintwindow.Vectorwithwithinwmsgxtabszipdownzipup
Dependencies:BiocGenerics
A quick overview of the S4 class system
Rendered fromS4QuickOverview.Rnwusingutils::Sweaveon Oct 29 2024.Last update: 2020-10-07
Started: 2016-06-22
An Overview of the S4Vectors package
Rendered fromS4VectorsOverview.Rmdusingknitr::rmarkdownon Oct 29 2024.Last update: 2024-04-05
Started: 2024-04-05
Rle Tips and Tricks
Rendered fromRleTricks.Rmdusingknitr::rmarkdownon Oct 29 2024.Last update: 2022-12-07
Started: 2022-12-07
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compute summary statistics of subsets of vector-like objects | aggregate aggregate,data.frame-method aggregate,List-method aggregate,matrix-method aggregate,Rle-method aggregate,ts-method aggregate,Vector-method aggregate-methods aggregate.Vector |
| Annotated class | Annotated Annotated-class metadata metadata,Annotated-method metadata<- metadata<-,Annotated-method |
| Combine objects along their ROWS or COLS | bindCOLS bindROWS bindROWS,ANY-method bindROWS,NULL-method |
| Some utility functions to operate on strings | safeExplode svn.time unstrsplit unstrsplit,character-method unstrsplit,list-method |
| DataFrame objects | as.data.frame,DataFrame-method as.data.frame.DataFrame as.matrix,DataFrame-method class:DataFrame class:DFrame classNameForDisplay,DFrame-method coerce,ANY,DataFrame-method coerce,ANY,DataFrame_OR_NULL-method coerce,ANY,DFrame-method coerce,AsIs,DFrame-method coerce,data.frame,DFrame-method coerce,data.table,DFrame-method coerce,list,DFrame-method coerce,NULL,DFrame-method coerce,SimpleList,DataFrame-method coerce,SimpleList,DFrame-method coerce,table,DFrame-method coerce,Vector,DFrame-method coerce,xtabs,DFrame-method colnames,DataFrame-method colnames<-,DataFrame-method DataFrame DataFrame-class DFrame DFrame-class dimnames<-,DataFrame-method droplevels,DFrame-method extractCOLS,DataFrame-method extractROWS,DataFrame,ANY-method getListElement,DataFrame-method horizontal_slot_names,DFrame-method length,DataFrame-method makeNakedCharacterMatrixForDisplay,DataFrame-method make_zero_col_DFrame mergeROWS,DFrame-method names,DataFrame-method ncol,DataFrame-method nrow,DataFrame-method rep,DataFrame-method replaceCOLS,DFrame-method replaceROWS,DFrame-method rownames,DataFrame-method rownames<-,DFrame-method show,DataFrame-method showAsCell,DataFrame-method updateObject,DataFrame-method vertical_slot_names,DFrame-method [,DataFrame-method [<-,DataFrame-method [[,DataFrame-method [[,DFrame-method [[<-,DFrame-method |
| Combine DataFrame objects along their rows or columns, or merge them | bindROWS,DataFrame-method c,DataFrame-method cbind,DataFrame-method cbind.DataFrame combineCols,DataFrame-method combineRows,DataFrame-method DataFrame-combine merge,data.frame,DataFrame-method merge,DataFrame,data.frame-method merge,DataFrame,DataFrame-method |
| DataFrame comparison methods | <=,DataFrame,DataFrame-method ==,DataFrame,DataFrame-method duplicated,DataFrame-method duplicated.DataFrame match,DataFrame,DataFrame-method order,DataFrame-method pcompare,DataFrame,DataFrame-method sameAsPreviousROW,DataFrame-method sort,DataFrame-method sort.DataFrame unique,DataFrame-method unique.DataFrame |
| Common operations on DataFrame objects | complete.cases,DataFrame-method DataFrame-utils is.na,DataFrame-method na.exclude,DataFrame-method na.omit,DataFrame-method relistToClass,data.frame-method relistToClass,DataFrame-method transform,DataFrame-method transform.DataFrame xtabs,DataFrame-method |
| DataFrameFactor objects | $,DataFrameFactor-method class:DataFrameFactor DataFrameFactor DataFrameFactor-class dim,DataFrameFactor-method dimnames,DataFrameFactor-method show,DataFrameFactor-method [,DataFrameFactor,ANY,ANY,ANY-method [,DataFrameFactor-method [[,DataFrameFactor,ANY,ANY-method [[,DataFrameFactor-method |
| Unlist the list-like columns of a DataFrame object | expand expand,DataFrame-method expand,Vector-method |
| Factor objects | as.character,Factor-method as.factor,Factor-method as.integer,Factor-method as.raw,Factor-method bindROWS,Factor-method class:Factor class:integer_OR_raw coerce,factor,Factor-method coerce,vector_OR_Vector,Factor-method droplevels,Factor-method droplevels.Factor Factor Factor-class FactorToClass FactorToClass,vector_OR_Vector-method integer_OR_raw integer_OR_raw-class levels levels<- levels<-,Factor-method match,Factor,Factor-method names,Factor-method names<-,Factor-method nlevels nlevels,Factor-method parallel_slot_names,Factor-method pcompare,Factor,Factor-method selfmatch,Factor-method show,Factor-method showAsCell,Factor-method unfactor unfactor,Factor-method unfactor,factor-method xtfrm,Factor-method |
| Matrix for Filter Results | cbind,FilterMatrix-method FilterMatrix FilterMatrix-class filterRules filterRules,FilterMatrix-method rbind,FilterMatrix-method show,FilterMatrix-method summary,FilterMatrix-method [,FilterMatrix-method |
| Collection of Filter Rules | &,FilterRules,FilterRules-method active active,FilterRules-method active<- active<-,FilterRules-method class:expression_OR_function class:FilterRules coerce,ANY,FilterRules-method coerce,function,FilterClosure-method coerce,SimpleList,FilterRules-method coerce,standardGeneric,FilterClosure-method eval,FilterRules,ANY-method evalSeparately evalSeparately,FilterRules-method expression_OR_function expression_OR_function-class FilterRules FilterRules-class parallel_slot_names,FilterRules-method params params,FilterClosure-method show,FilterClosure-method subsetByFilter subsetByFilter,ANY,FilterRules-method summary,FilterRules-method [,FilterRules-method [[<-,FilterRules-method |
| Hits objects | as.data.frame,Hits-method as.data.frame.Hits as.matrix,Hits-method as.table,Hits-method bindROWS,Hits-method breakTies class:Hits class:SelfHits class:SortedByQueryHits class:SortedByQuerySelfHits classNameForDisplay,SortedByQueryHits-method coerce,Hits,DFrame-method coerce,Hits,SelfHits-method coerce,Hits,SortedByQueryHits-method coerce,Hits,SortedByQuerySelfHits-method coerce,SelfHits,SortedByQuerySelfHits-method coerce,SortedByQueryHits,SortedByQuerySelfHits-method countLnodeHits countLnodeHits,Hits-method countQueryHits countRnodeHits countRnodeHits,Hits-method countSubjectHits extractROWS,SortedByQueryHits,ANY-method from from,Hits-method Hits Hits-class isRedundantHit isSelfHit makeNakedCharacterMatrixForDisplay,Hits-method nLnode nLnode,Hits-method nnode nnode,SelfHits-method nRnode nRnode,Hits-method parallel_slot_names,Hits-method queryHits queryLength remapHits selectHits SelfHits SelfHits-class show,Hits-method sort,SortedByQueryHits-method SortedByQueryHits SortedByQueryHits-class SortedByQuerySelfHits SortedByQuerySelfHits-class subjectHits subjectLength summary,Hits-method summary.Hits t,Hits-method t.Hits to to,Hits-method updateObject,Hits-method |
| Comparing and ordering hits | Hits-comparison match,Hits,Hits-method order,Hits-method pcompare,Hits,Hits-method |
| Set operations on Hits objects | Hits-setops union,SortedByQueryHits,Hits-method |
| List of Hits objects | as.matrix,HitsList-method as.table,HitsList-method class:HitsList class:SelfHitsList class:SortedByQueryHitsList class:SortedByQuerySelfHitsList coerce,HitsList,SortedByQueryHitsList-method coerce,SortedByQueryHitsList,HitsList-method HitsList HitsList-class queryHits,HitsList-method relistToClass,Hits-method relistToClass,SortedByQueryHits-method SelfHitsList SelfHitsList-class SortedByQueryHitsList SortedByQueryHitsList-class SortedByQuerySelfHitsList SortedByQuerySelfHitsList-class space space,HitsList-method splitAsList,SortedByQueryHits,ANY-method subjectHits,HitsList-method t,HitsList-method |
| Some utility functions to operate on integer vectors | duplicatedIntegerPairs duplicatedIntegerQuads isSequence matchIntegerPairs matchIntegerQuads orderIntegerPairs orderIntegerQuads selfmatchIntegerPairs selfmatchIntegerQuads toListOfIntegerVectors |
| Test if a vector-like object is sorted | isConstant isConstant,array-method isConstant,integer-method isConstant,numeric-method isSorted isSorted,ANY-method isStrictlySorted isStrictlySorted,ANY-method |
| List objects | $,List-method $<-,List-method as.data.frame,List-method as.list,List-method class:List class:list_OR_List coerce,ANY,List-method coerce,integer,List-method coerce,List,list-method elementNROWS elementNROWS,ANY-method elementNROWS,List-method elementType elementType,List-method elementType,vector-method getListElement,List-method isEmpty isEmpty,ANY-method isEmpty,List-method List List-class list_OR_List list_OR_List-class parallelVectorNames,List-method setListElement,List-method show,List-method showAsCell,List-method unlist,List-method [,List-method [<-,List-method [[,List-method [[<-,List-method |
| Common operations on List objects | cbind,List-method cbind.List droplevels,List-method droplevels.List endoapply Filter,List-method Find,List-method lapply,List-method List-utils Map,List-method mendoapply pc Position,List-method rbind,List-method Reduce,List-method revElements revElements,List-method revElements,list-method sapply,List-method within,List-method |
| LLint vectors | as.character,LLint-method as.character.LLint as.integer,LLint-method as.integer.LLint as.LLint as.logical,LLint-method as.logical.LLint as.numeric,LLint-method as.numeric.LLint bindROWS,LLint-method c,LLint-method class:integer_OR_LLint class:LLint coerce,character,LLint-method coerce,integer,LLint-method coerce,logical,LLint-method coerce,numeric,LLint-method integer_OR_LLint integer_OR_LLint-class is.LLint is.na,LLint-method length,LLint-method LLint LLint-class NA_LLint_ Ops,LLint,LLint-method Ops,LLint,numeric-method Ops,numeric,LLint-method show,LLint-method showAsCell,LLint-method Summary,LLint-method |
| Pairs objects | as.data.frame,Pairs-method class:Pairs coerce,list_OR_List,Pairs-method coerce,Pairs,DFrame-method first first,Pairs-method first<- first<-,Pairs-method makeNakedCharacterMatrixForDisplay,Pairs-method match,Pairs,Pairs-method names,Pairs-method names<-,Pairs-method order,Pairs-method Pairs Pairs-class parallel_slot_names,Pairs-method pcompare,Pairs,Pairs-method sameAsPreviousROW,Pairs-method second second,Pairs-method second<- second<-,Pairs-method show,Pairs-method zipup,Pairs,missing-method |
| RectangularData objects | cbind,RectangularData-method cbind.RectangularData class:RectangularData combineCols combineRows combineUniqueCols dim,RectangularData-method dimnames,RectangularData-method dimnames<-,RectangularData-method head,RectangularData-method head.RectangularData horizontal_slot_names rbind,RectangularData-method rbind.RectangularData RectangularData RectangularData-class ROWNAMES ROWNAMES,ANY-method ROWNAMES,RectangularData-method ROWNAMES<- ROWNAMES<-,ANY-method ROWNAMES<-,RectangularData-method subset,RectangularData-method tail,RectangularData-method tail.RectangularData vertical_slot_names |
| Rle objects | %in%,Rle,ANY-method anyDuplicated,Rle-method anyDuplicated,RleNSBS-method anyDuplicated.Rle anyNA,Rle-method append,Rle,vector-method append,vector,Rle-method as.data.frame,Rle-method as.factor,Rle-method as.integer,RleNSBS-method as.list,Rle-method as.list.Rle as.vector,Rle-method as.vector.Rle bindROWS,Rle-method class:Rle coerce,ANY,Rle-method coerce,Rle,character-method coerce,Rle,complex-method coerce,Rle,factor-method coerce,Rle,integer-method coerce,Rle,list-method coerce,Rle,logical-method coerce,Rle,numeric-method coerce,Rle,raw-method coerce,Rle,vector-method decode decode,ANY-method decode,Rle-method duplicated,Rle-method end,Rle-method extractROWS,Rle,ANY-method extractROWS,Rle,NSBS-method extractROWS,Rle,RangeNSBS-method extractROWS,Rle,RleNSBS-method findRun findRun,Rle-method intersect,ANY,Rle-method intersect,Rle,ANY-method intersect,Rle,Rle-method is.finite,Rle-method is.na,Rle-method is.unsorted,Rle-method isStrictlySorted,Rle-method isStrictlySorted,RleNSBS-method length,Rle-method length,RleNSBS-method match,ANY,Rle-method match,Rle,ANY-method match,Rle,Rle-method nrun nrun,Rle-method NSBS,Rle-method order,Rle-method rank,Rle-method rep,Rle-method rep.int,Rle-method replaceROWS,Rle,ANY-method rev,Rle-method rev.Rle Rle Rle,ANY-method Rle,Rle-method Rle-class runLength runLength,Rle-method runLength<- runLength<-,Rle-method runValue runValue,Rle-method runValue<- runValue<-,Rle-method setdiff,ANY,Rle-method setdiff,Rle,ANY-method setdiff,Rle,Rle-method show,Rle-method sort,Rle-method sort.Rle start,Rle-method table,Rle-method tabulate,Rle-method union,ANY,Rle-method union,Rle,ANY-method union,Rle,Rle-method unique,Rle-method width,Rle-method xtfrm,Rle-method [,Rle-method [<-,Rle,ANY-method |
| Fixed-width running window summaries | Rle-runstat runmean runmean,Rle-method runmed,Rle-method runq runq,Rle-method runsum runsum,Rle-method runwtsum runwtsum,Rle-method smoothEnds,Rle-method |
| Common operations on Rle objects | !,Rle-method chartr,ANY,ANY,Rle-method Complex,Rle-method cor,Rle,Rle-method cov,Rle,Rle-method diff,Rle-method diff.Rle droplevels,Rle-method droplevels.Rle gsub,ANY,ANY,Rle-method IQR,Rle-method levels,Rle-method levels.Rle levels<-,Rle-method mad,Rle-method mad.Rle Math,Rle-method Math2,Rle-method mean,Rle-method mean.Rle median,Rle-method median.Rle nchar,Rle-method Ops,Rle,Rle-method Ops,Rle,vector-method Ops,vector,Rle-method paste,Rle-method pmax,Rle-method pmax.int,Rle-method pmin,Rle-method pmin.int,Rle-method quantile,Rle-method quantile.Rle Rle-utils sd,Rle-method sub,ANY,ANY,Rle-method substr,Rle-method substring,Rle-method Summary,Rle-method summary,Rle-method summary.Rle tolower,Rle-method toupper,Rle-method var,Rle,missing-method var,Rle,Rle-method which,Rle-method which.max,Rle-method |
| Apply a function over subsequences of 2 vector-like objects | shiftApply shiftApply,Vector,Vector-method shiftApply,vector,vector-method shiftApply-methods |
| Display utilities | cbind_mcols_for_display classNameForDisplay classNameForDisplay,ANY-method coolcat get_showHeadLines get_showTailLines makeClassinfoRowForCompactPrinting makeNakedCharacterMatrixForDisplay makeNakedCharacterMatrixForDisplay,ANY-method makePrettyMatrixForCompactPrinting printAtomicVectorInAGrid set_showHeadLines set_showTailLines show-utils showAsCell showAsCell,ANY-method showAsCell,AsIs-method showAsCell,character-method showAsCell,data.frame-method showAsCell,list-method showAsCell,numeric-method showHeadLines showTailLines |
| SimpleList objects | as.env,SimpleList-method as.list,SimpleList-method as.list.SimpleList class:SimpleList classNameForDisplay,SimpleList-method coerce,ANY,SimpleList-method coerce,list,List-method lapply,SimpleList-method names,SimpleList-method names<-,SimpleList-method parallel_slot_names,SimpleList-method SimpleList SimpleList-class updateObject,SimpleList-method |
| Divide a vector-like object into groups | relistToClass relistToClass,ANY-method split split,ANY,Vector-method split,list,Vector-method split,Vector,ANY-method split,Vector,Vector-method splitAsList splitAsList,ANY,ANY-method |
| Stack objects | mstack mstack,DataFrame-method mstack,Vector-method mstack,vector-method stack,List-method stack,matrix-method stack-methods |
| Subsetting utilities | anyDuplicated,NSBS-method anyDuplicated,RangeNSBS-method anyDuplicated.NSBS as.integer,NativeNSBS-method as.integer,RangeNSBS-method class:NSBS extractCOLS extractROWS extractROWS,ANY,ANY-method extractROWS,array,RangeNSBS-method extractROWS,data.frame,RangeNSBS-method extractROWS,vector_OR_factor,RangeNSBS-method getListElement getListElement,list-method isStrictlySorted,NSBS-method isStrictlySorted,RangeNSBS-method length,NSBS-method length,RangeNSBS-method max,NSBS-method max,RangeNSBS-method mergeROWS mergeROWS,ANY,ANY-method normalizeDoubleBracketSubscript normalizeSingleBracketReplacementValue normalizeSingleBracketReplacementValue,ANY-method normalizeSingleBracketSubscript NSBS NSBS,ANY-method NSBS,character-method NSBS,factor-method NSBS,logical-method NSBS,missing-method NSBS,NSBS-method NSBS,NULL-method NSBS,numeric-method NSBS-class replaceCOLS replaceROWS replaceROWS,ANY,ANY-method setListElement setListElement,list-method show,RangeNSBS-method subsetting-utils |
| TransposedDataFrame objects | as.list,TransposedDataFrame-method as.list.TransposedDataFrame as.matrix,TransposedDataFrame-method bindCOLS,TransposedDataFrame-method bindROWS,TransposedDataFrame-method class:TransposedDataFrame coerce,ANY,TransposedDataFrame-method coerce,DataFrame,TransposedDataFrame-method coerce,TransposedDataFrame,DataFrame-method colnames,TransposedDataFrame-method dimnames<-,TransposedDataFrame-method extractCOLS,TransposedDataFrame-method extractROWS,TransposedDataFrame,ANY-method getListElement,TransposedDataFrame-method length,TransposedDataFrame-method makeNakedCharacterMatrixForDisplay,TransposedDataFrame-method names,TransposedDataFrame-method names<-,TransposedDataFrame-method ncol,TransposedDataFrame-method normalizeSingleBracketReplacementValue,TransposedDataFrame-method nrow,TransposedDataFrame-method rownames,TransposedDataFrame-method show,TransposedDataFrame-method t,DataFrame-method t,TransposedDataFrame-method t.DataFrame t.TransposedDataFrame TransposedDataFrame TransposedDataFrame-class [,TransposedDataFrame-method [<-,TransposedDataFrame-method |
| Vector objects | anyNA,Vector-method append append,Vector,Vector-method as.character,Vector-method as.complex,Vector-method as.data.frame,Vector-method as.data.frame.Vector as.double,Vector-method as.env as.env,NULL-method as.env,Vector-method as.integer,Vector-method as.list,Vector-method as.list.Vector as.logical,Vector-method as.matrix,Vector-method as.matrix.Vector as.numeric,Vector-method as.raw,Vector-method bindROWS,Vector-method c c,Vector-method class:Vector class:vector_OR_Vector coerce,Vector,character-method coerce,Vector,complex-method coerce,Vector,data.frame-method coerce,Vector,double-method coerce,Vector,factor-method coerce,Vector,integer-method coerce,Vector,logical-method coerce,Vector,numeric-method coerce,Vector,raw-method coerce,Vector,vector-method elementMetadata elementMetadata,Vector-method elementMetadata<- elementMetadata<-,Vector-method expand.grid expand.grid,Vector-method head head,Vector-method head.Vector is.na,Vector-method length,Vector-method lengths,Vector-method mcols mcols,Vector-method mcols<- mcols<-,Vector-method mergeROWS,Vector,ANY-method parallelVectorNames parallelVectorNames,ANY-method parallel_slot_names parallel_slot_names,Vector-method rename rename,Vector-method rename,vector-method rep rep,Vector-method rep.int rep.int,Vector-method replaceROWS,Vector,ANY-method rev rev,Vector-method rev.Vector subset subset,Vector-method subset.Vector summary,Vector-method summary.Vector tail tail,Vector-method tail.Vector transform,Vector-method transform.Vector unname,Vector-method updateObject,Vector-method values values,Vector-method values<- values<-,Vector-method Vector Vector-class vector_OR_Vector vector_OR_Vector-class window window,Vector-method window.Vector [ [,Vector-method [<-,Vector-method |
| Compare, order, tabulate vector-like objects | !=,ANY,Vector-method !=,Vector,ANY-method !=,Vector,Vector-method %in%,ANY,Vector-method %in%,Vector,ANY-method %in%,Vector,Vector-method <,ANY,Vector-method <,Vector,ANY-method <,Vector,Vector-method <=,ANY,Vector-method <=,Vector,ANY-method <=,Vector,Vector-method ==,ANY,Vector-method ==,Vector,ANY-method ==,Vector,Vector-method >,ANY,Vector-method >,Vector,ANY-method >,Vector,Vector-method >=,ANY,Vector-method >=,Vector,ANY-method >=,Vector,Vector-method anyDuplicated,Vector-method anyDuplicated.Vector countMatches countMatches,ANY,ANY-method duplicated,Vector-method duplicated.Vector findMatches findMatches,ANY,ANY-method findMatches,ANY,missing-method match match,Vector,Vector-method pcompare pcompare,ANY,ANY-method pcompare,numeric,numeric-method rank,Vector-method sameAsPreviousROW sameAsPreviousROW,ANY-method selfmatch selfmatch,ANY-method selfmatch,factor-method selfmatch,Vector-method sort,Vector-method sort.Vector table,Vector-method unique,Vector-method unique.Vector Vector-comparison xtfrm,Vector-method |
| Merge vector-like objects | merge merge,Vector,Vector-method Vector-merge |
| Set operations on vector-like objects | intersect,Vector,Vector-method intersect.Vector setdiff,Vector,Vector-method setdiff.Vector setequal,Vector,Vector-method setequal.Vector union,Vector,Vector-method union.Vector Vector-setops |
| Convert between parallel vectors and lists | zipdown zipdown,ANY-method zipdown,List-method zipup zipup,ANY,ANY-method |
