Package 'remotes' reference manual

Title:	R Package Installation from Remote Repositories, Including 'GitHub'
Description:	Download and install R packages stored in 'GitHub', 'GitLab', 'Bitbucket', 'Bioconductor', or plain 'subversion' or 'git' repositories. This package provides the 'install_*' functions in 'devtools'. Indeed most of the code was copied over from 'devtools'.
Authors:	Gábor Csárdi [aut, cre], Jim Hester [aut], Hadley Wickham [aut], Winston Chang [aut], Martin Morgan [aut], Dan Tenenbaum [aut], Posit Software, PBC [cph, fnd], Mango Solutions [cph]
Maintainer:	Gábor Csárdi <[email protected]>
License:	MIT + file LICENSE
Version:	2.4.2.9000
Built:	2024-11-22 02:50:17 UTC
Source:	https://github.com/mojaveazure/remotes

Download a specified version of a CRAN package

Description

It downloads the package to a temporary file, and returns the name of the file.

Usage

download_version(
  package,
  version = NULL,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)
download_version(
  package,
  version = NULL,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)

Arguments

`package`	Name of the package to install.
`version`	Version of the package to install. Can either be a string giving the exact version required, or a specification in the same format as the parenthesized expressions used in package dependencies. One of the following formats: An exact version required, as a string, e.g. `"0.1.13"` A comparison operator and a version, e.g. `">= 0.1.12"` Several criteria to satisfy, as a comma-separated string, e.g. `">= 1.12.0, < 1.14"` Several criteria to satisfy, as elements of a character vector, e.g. `c(">= 1.12.0", "< 1.14")`
`repos`	character vector, the base URL(s) of the repositories to use, e.g., the URL of a CRAN mirror such as `"https://cloud.r-project.org"`. For more details on supported URL schemes see `url`. Can be `NULL` to install from local files, directories or URLs: this will be inferred by extension from `pkgs` if of length one.
`type`	character, indicating the type of package to download and install. Will be `"source"` except on Windows and some macOS builds: see the section on ‘Binary packages’ for those.
`...`	Other arguments passed on to `utils::install.packages()`.

Value

Name of the downloaded file.

GitHub references

Description

Use as ref parameter to install_github(). Allows installing a specific pull request or the latest release.

Usage

github_pull(pull)

github_release()
github_pull(pull)

github_release()

Arguments

pull

Character string specifying the pull request to install

Examples

github_pull("42")
github_pull("42")

Install a development package from the Bioconductor git repository

Description

This function requires git to be installed on your system in order to be used.

Usage

install_bioc(
  repo,
  mirror = getOption("BioC_git", download_url("git.bioconductor.org/packages")),
  git = c("auto", "git2r", "external"),
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)
install_bioc(
  repo,
  mirror = getOption("BioC_git", download_url("git.bioconductor.org/packages")),
  git = c("auto", "git2r", "external"),
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)

Arguments

`repo`	Repository address in the format `⁠[username:password@][release/]repo[#commit]⁠`. Valid values for the release are ‘devel’, ‘release’ (the default if none specified), or numeric release numbers (e.g. ‘3.3’).
`mirror`	The Bioconductor git mirror to use
`git`	Whether to use the `git2r` package, or an external git client via system. Default is `git2r` if it is installed, otherwise an external git installation.
`dependencies`	Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector. `TRUE` is shorthand for "Depends", "Imports", "LinkingTo" and "Suggests". `NA` is shorthand for "Depends", "Imports" and "LinkingTo" and is the default. `FALSE` is shorthand for no dependencies (i.e. just check this package, not its dependencies). The value "soft" means the same as `TRUE`, "hard" means the same as `NA`. You can also specify dependencies from one or more additional fields, common ones include: Config/Needs/website - for dependencies used in building the pkgdown site. Config/Needs/coverage for dependencies used in calculating test coverage.
`upgrade`	Should package dependencies be upgraded? One of "default", "ask", "always", or "never". "default" respects the value of the `R_REMOTES_UPGRADE` environment variable if set, and falls back to "ask" if unset. "ask" prompts the user for which out of date packages to upgrade. For non-interactive sessions "ask" is equivalent to "always". `TRUE` and `FALSE` are also accepted and correspond to "always" and "never" respectively.
`force`	Force installation, even if the remote state has not changed since the previous install.
`quiet`	If `TRUE`, suppress output.
`build`	If `TRUE` build the package before installing.
`build_opts`	Options to pass to `⁠R CMD build⁠`, only used when `build` is `TRUE`.
`build_manual`	If `FALSE`, don't build PDF manual ('–no-manual').
`build_vignettes`	If `FALSE`, don't build package vignettes ('–no-build-vignettes').
`repos`	A character vector giving repositories to use.
`type`	Type of package to `update`.
`...`	Other arguments passed on to `utils::install.packages()`.

Details

It is vectorised so you can install multiple packages with a single command.

This is intended as an aid for Bioconductor developers. If you want to install the release version of a Bioconductor package one can use the BiocManager package.

Examples

## Not run: 
install_bioc("SummarizedExperiment")
install_bioc("devel/SummarizedExperiment")
install_bioc("3.3/SummarizedExperiment")
install_bioc("SummarizedExperiment#abc123")
install_bioc("user:password@release/SummarizedExperiment")
install_bioc("user:password@devel/SummarizedExperiment")
install_bioc("user:password@SummarizedExperiment#abc123")

## End(Not run)
## Not run: 
install_bioc("SummarizedExperiment")
install_bioc("devel/SummarizedExperiment")
install_bioc("3.3/SummarizedExperiment")
install_bioc("SummarizedExperiment#abc123")
install_bioc("user:password@release/SummarizedExperiment")
install_bioc("user:password@devel/SummarizedExperiment")
install_bioc("user:password@SummarizedExperiment#abc123")

## End(Not run)

Install a package directly from Bitbucket

Description

This function is vectorised so you can install multiple packages in a single command.

Usage

install_bitbucket(
  repo,
  ref = "HEAD",
  subdir = NULL,
  auth_user = bitbucket_user(),
  password = bitbucket_password(),
  host = "api.bitbucket.org/2.0",
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)
install_bitbucket(
  repo,
  ref = "HEAD",
  subdir = NULL,
  auth_user = bitbucket_user(),
  password = bitbucket_password(),
  host = "api.bitbucket.org/2.0",
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)

Arguments

`repo`	Repository address in the format `⁠username/repo[/subdir][@ref]⁠`. Alternatively, you can specify `subdir` and/or `ref` using the respective parameters (see below); if both are specified, the values in `repo` take precedence.
`ref`	Desired git reference; could be a commit, tag, or branch name. Defaults to HEAD.
`subdir`	Subdirectory within repo that contains the R package.
`auth_user`	your account username if you're attempting to install a package hosted in a private repository (and your username is different to `username`). Defaults to the `BITBUCKET_USER` environment variable.
`password`	your password. Defaults to the `BITBUCKET_PASSWORD` environment variable. See details for further information on setting up a password.
`host`	GitHub API host to use. Override with your GitHub enterprise hostname, for example, `"github.hostname.com/api/v3"`.
`dependencies`	Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector. `TRUE` is shorthand for "Depends", "Imports", "LinkingTo" and "Suggests". `NA` is shorthand for "Depends", "Imports" and "LinkingTo" and is the default. `FALSE` is shorthand for no dependencies (i.e. just check this package, not its dependencies). The value "soft" means the same as `TRUE`, "hard" means the same as `NA`. You can also specify dependencies from one or more additional fields, common ones include: Config/Needs/website - for dependencies used in building the pkgdown site. Config/Needs/coverage for dependencies used in calculating test coverage.
`upgrade`	Should package dependencies be upgraded? One of "default", "ask", "always", or "never". "default" respects the value of the `R_REMOTES_UPGRADE` environment variable if set, and falls back to "ask" if unset. "ask" prompts the user for which out of date packages to upgrade. For non-interactive sessions "ask" is equivalent to "always". `TRUE` and `FALSE` are also accepted and correspond to "always" and "never" respectively.
`force`	Force installation, even if the remote state has not changed since the previous install.
`quiet`	If `TRUE`, suppress output.
`build`	If `TRUE` build the package before installing.
`build_opts`	Options to pass to `⁠R CMD build⁠`, only used when `build` is `TRUE`.
`build_manual`	If `FALSE`, don't build PDF manual ('–no-manual').
`build_vignettes`	If `FALSE`, don't build package vignettes ('–no-build-vignettes').
`repos`	A character vector giving repositories to use.
`type`	Type of package to `update`.
`...`	Other arguments passed on to `utils::install.packages()`.

Details

To install from a private repo, or more generally, access the Bitbucket API with your own credentials, you will need to get an access token. You can create an access token following the instructions found in the Bitbucket App Passwords documentation. The App Password requires read-only access to your repositories and pull requests. Then store your password in the environment variable BITBUCKET_PASSWORD (e.g. evelynwaugh:swordofhonour)

Note that on Windows, authentication requires the "libcurl" download method. You can set the default download method via the download.file.method option:

options(download.file.method = "libcurl")

In particular, if unset, RStudio sets the download method to "wininet". To override this, you might want to set it to "libcurl" in your R profile, see base::Startup. The caveat of the "libcurl" method is that it does not set the system proxies automatically, see "Setting Proxies" in utils::download.file().

Examples

## Not run: 
install_bitbucket("sulab/mygene.r@default")
install_bitbucket("djnavarro/lsr")

## End(Not run)
## Not run: 
install_bitbucket("sulab/mygene.r@default")
install_bitbucket("djnavarro/lsr")

## End(Not run)

Attempts to install a package from CRAN.

Description

This function is vectorised on pkgs so you can install multiple packages in a single command.

Usage

install_cran(
  pkgs,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  ...
)
install_cran(
  pkgs,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  ...
)

Arguments

`pkgs`	A character vector of packages to install.
`repos`	A character vector giving repositories to use.
`type`	Type of package to `update`.
`dependencies`	Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector. `TRUE` is shorthand for "Depends", "Imports", "LinkingTo" and "Suggests". `NA` is shorthand for "Depends", "Imports" and "LinkingTo" and is the default. `FALSE` is shorthand for no dependencies (i.e. just check this package, not its dependencies). The value "soft" means the same as `TRUE`, "hard" means the same as `NA`. You can also specify dependencies from one or more additional fields, common ones include: Config/Needs/website - for dependencies used in building the pkgdown site. Config/Needs/coverage for dependencies used in calculating test coverage.
`upgrade`	Should package dependencies be upgraded? One of "default", "ask", "always", or "never". "default" respects the value of the `R_REMOTES_UPGRADE` environment variable if set, and falls back to "ask" if unset. "ask" prompts the user for which out of date packages to upgrade. For non-interactive sessions "ask" is equivalent to "always". `TRUE` and `FALSE` are also accepted and correspond to "always" and "never" respectively.
`force`	Force installation, even if the remote state has not changed since the previous install.
`quiet`	If `TRUE`, suppress output.
`build`	If `TRUE` build the package before installing.
`build_opts`	Options to pass to `⁠R CMD build⁠`, only used when `build` is `TRUE`.
`build_manual`	If `FALSE`, don't build PDF manual ('–no-manual').
`build_vignettes`	If `FALSE`, don't build package vignettes ('–no-build-vignettes').
`...`	Other arguments passed on to `utils::install.packages()`.

Examples

## Not run: 
install_cran("ggplot2")
install_cran(c("httpuv", "shiny"))

## End(Not run)
## Not run: 
install_cran("ggplot2")
install_cran(c("httpuv", "shiny"))

## End(Not run)

Install package dependencies if needed.

Description

Install package dependencies if needed.

Usage

install_deps(
  pkgdir = ".",
  dependencies = NA,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  upgrade = c("default", "ask", "always", "never"),
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  ...
)
install_deps(
  pkgdir = ".",
  dependencies = NA,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  upgrade = c("default", "ask", "always", "never"),
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  ...
)

Arguments

`pkgdir`	Path to a package directory, or to a package tarball.
`dependencies`	Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector. `TRUE` is shorthand for "Depends", "Imports", "LinkingTo" and "Suggests". `NA` is shorthand for "Depends", "Imports" and "LinkingTo" and is the default. `FALSE` is shorthand for no dependencies (i.e. just check this package, not its dependencies). The value "soft" means the same as `TRUE`, "hard" means the same as `NA`. You can also specify dependencies from one or more additional fields, common ones include: Config/Needs/website - for dependencies used in building the pkgdown site. Config/Needs/coverage for dependencies used in calculating test coverage.
`repos`	A character vector giving repositories to use.
`type`	Type of package to `update`.
`upgrade`	Should package dependencies be upgraded? One of "default", "ask", "always", or "never". "default" respects the value of the `R_REMOTES_UPGRADE` environment variable if set, and falls back to "ask" if unset. "ask" prompts the user for which out of date packages to upgrade. For non-interactive sessions "ask" is equivalent to "always". `TRUE` and `FALSE` are also accepted and correspond to "always" and "never" respectively.
`quiet`	If `TRUE`, suppress output.
`build`	If `TRUE` build the package before installing.
`build_opts`	Options to pass to `⁠R CMD build⁠`, only used when `build` is `TRUE`.
`build_manual`	If `FALSE`, don't build PDF manual ('–no-manual').
`build_vignettes`	If `FALSE`, don't build package vignettes ('–no-build-vignettes').
`...`	additional arguments passed to `utils::install.packages()`.

Examples

## Not run: install_deps(".")
## Not run: install_deps(".")

Install the development version of a package

Description

install_dev() retrieves the package DESCRIPTION from the CRAN mirror and looks in the 'URL' and 'BugReports' fields for GitHub, GitLab or Bitbucket URLs. It then calls the appropriate install_() function to install the development package.

Usage

install_dev(package, cran_url = getOption("repos")[["CRAN"]], ...)
install_dev(package, cran_url = getOption("repos")[["CRAN"]], ...)

Arguments

`package`	The package name to install.
`cran_url`	The URL of the CRAN mirror to use, by default based on the 'repos' option. If unset uses 'https://cloud.r-project.org'.
`...`	Additional arguments passed to `install_github()`, `install_gitlab()`, or `install_bitbucket()` functions.

Examples

## Not run: 
# From GitHub
install_dev("dplyr")

# From GitLab
install_dev("iemiscdata")

# From Bitbucket
install_dev("argparser")

## End(Not run)
## Not run: 
# From GitHub
install_dev("dplyr")

# From GitLab
install_dev("iemiscdata")

# From Bitbucket
install_dev("argparser")

## End(Not run)

Install a package from a git repository

Description

It is vectorised so you can install multiple packages with a single command. You do not need to have the git2r package, or an external git client installed.

Usage

install_git(
  url,
  subdir = NULL,
  ref = NULL,
  branch = NULL,
  credentials = git_credentials(),
  git = c("auto", "git2r", "external"),
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)
install_git(
  url,
  subdir = NULL,
  ref = NULL,
  branch = NULL,
  credentials = git_credentials(),
  git = c("auto", "git2r", "external"),
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)

Arguments

`url`	Location of package. The url should point to a public or private repository.
`subdir`	A sub-directory within a git repository that may contain the package we are interested in installing.
`ref`	Name of branch, tag or SHA reference to use, if not HEAD.
`branch`	Deprecated, synonym for ref.
`credentials`	A git2r credentials object passed through to clone. Supplying this argument implies using `git2r` with `git`.
`git`	Whether to use the `git2r` package, or an external git client via system. Default is `git2r` if it is installed, otherwise an external git installation.
`dependencies`	Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector. `TRUE` is shorthand for "Depends", "Imports", "LinkingTo" and "Suggests". `NA` is shorthand for "Depends", "Imports" and "LinkingTo" and is the default. `FALSE` is shorthand for no dependencies (i.e. just check this package, not its dependencies). The value "soft" means the same as `TRUE`, "hard" means the same as `NA`. You can also specify dependencies from one or more additional fields, common ones include: Config/Needs/website - for dependencies used in building the pkgdown site. Config/Needs/coverage for dependencies used in calculating test coverage.
`upgrade`	Should package dependencies be upgraded? One of "default", "ask", "always", or "never". "default" respects the value of the `R_REMOTES_UPGRADE` environment variable if set, and falls back to "ask" if unset. "ask" prompts the user for which out of date packages to upgrade. For non-interactive sessions "ask" is equivalent to "always". `TRUE` and `FALSE` are also accepted and correspond to "always" and "never" respectively.
`force`	Force installation, even if the remote state has not changed since the previous install.
`quiet`	If `TRUE`, suppress output.
`build`	If `TRUE` build the package before installing.
`build_opts`	Options to pass to `⁠R CMD build⁠`, only used when `build` is `TRUE`.
`build_manual`	If `FALSE`, don't build PDF manual ('–no-manual').
`build_vignettes`	If `FALSE`, don't build package vignettes ('–no-build-vignettes').
`repos`	A character vector giving repositories to use.
`type`	Type of package to `update`.
`...`	Other arguments passed on to `utils::install.packages()`.

Details

If you need to set git credentials for use in the Remotes field you can do so by placing the credentials in the remotes.git_credentials global option.

Examples

## Not run: 
install_git("https://github.com/hadley/stringr.git")
install_git("https://github.com/hadley/stringr.git", ref = "stringr-0.2")

## End(Not run)
## Not run: 
install_git("https://github.com/hadley/stringr.git")
install_git("https://github.com/hadley/stringr.git", ref = "stringr-0.2")

## End(Not run)

Attempts to install a package directly from GitHub.

Description

This function is vectorised on repo so you can install multiple packages in a single command.

Usage

install_github(
  repo,
  ref = "HEAD",
  subdir = NULL,
  auth_token = github_pat(quiet),
  host = "api.github.com",
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)
install_github(
  repo,
  ref = "HEAD",
  subdir = NULL,
  auth_token = github_pat(quiet),
  host = "api.github.com",
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)

Arguments

`repo`	Repository address in the format `⁠username/repo[/subdir][@ref\|#pull\|@*release]⁠`. Alternatively, you can specify `subdir` and/or `ref` using the respective parameters (see below); if both are specified, the values in `repo` take precedence.
`ref`	Desired git reference. Could be a commit, tag, or branch name, or a call to `github_pull()` or `github_release()`. Defaults to `"HEAD"`, which means the default branch on GitHub and for git remotes. See setting-the-default-branch for more details.
`subdir`	Subdirectory within repo that contains the R package.
`auth_token`	To install from a private repo, generate a personal access token (PAT) with at least repo scope in https://github.com/settings/tokens and supply to this argument. This is safer than using a password because you can easily delete a PAT without affecting any others. Defaults to the `GITHUB_PAT` environment variable.
`host`	GitHub API host to use. Override with your GitHub enterprise hostname, for example, `"github.hostname.com/api/v3"`.
`dependencies`	Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector. `TRUE` is shorthand for "Depends", "Imports", "LinkingTo" and "Suggests". `NA` is shorthand for "Depends", "Imports" and "LinkingTo" and is the default. `FALSE` is shorthand for no dependencies (i.e. just check this package, not its dependencies). The value "soft" means the same as `TRUE`, "hard" means the same as `NA`. You can also specify dependencies from one or more additional fields, common ones include: Config/Needs/website - for dependencies used in building the pkgdown site. Config/Needs/coverage for dependencies used in calculating test coverage.
`upgrade`	Should package dependencies be upgraded? One of "default", "ask", "always", or "never". "default" respects the value of the `R_REMOTES_UPGRADE` environment variable if set, and falls back to "ask" if unset. "ask" prompts the user for which out of date packages to upgrade. For non-interactive sessions "ask" is equivalent to "always". `TRUE` and `FALSE` are also accepted and correspond to "always" and "never" respectively.
`force`	Force installation, even if the remote state has not changed since the previous install.
`quiet`	If `TRUE`, suppress output.
`build`	If `TRUE` build the package before installing.
`build_opts`	Options to pass to `⁠R CMD build⁠`, only used when `build` is `TRUE`.
`build_manual`	If `FALSE`, don't build PDF manual ('–no-manual').
`build_vignettes`	If `FALSE`, don't build package vignettes ('–no-build-vignettes').
`repos`	A character vector giving repositories to use.
`type`	Type of package to `update`.
`...`	Other arguments passed on to `utils::install.packages()`.

Details

If the repository uses submodules a command-line git client is required to clone the submodules.

Examples

## Not run: 
install_github("klutometis/roxygen")
install_github("wch/ggplot2", ref = github_pull("142"))
install_github(c("rstudio/httpuv", "rstudio/shiny"))
install_github(c("hadley/[email protected]", "klutometis/roxygen#142",
  "r-lib/roxygen2@*release", "mfrasca/r-logging/pkg"))

# To install from a private repo, use auth_token with a token
# from https://github.com/settings/tokens. You only need the
# repo scope. Best practice is to save your PAT in env var called
# GITHUB_PAT.
install_github("hadley/private", auth_token = "abc")

# To pass option arguments to `R CMD INSTALL` use `INSTALL_opts`. e.g. to
install a package with source references and tests
install_github("rstudio/shiny", INSTALL_opts = c("--with-keep.source", "--install-tests"))

## End(Not run)
## Not run: 
install_github("klutometis/roxygen")
install_github("wch/ggplot2", ref = github_pull("142"))
install_github(c("rstudio/httpuv", "rstudio/shiny"))
install_github(c("hadley/[email protected]", "klutometis/roxygen#142",
  "r-lib/roxygen2@*release", "mfrasca/r-logging/pkg"))

# To install from a private repo, use auth_token with a token
# from https://github.com/settings/tokens. You only need the
# repo scope. Best practice is to save your PAT in env var called
# GITHUB_PAT.
install_github("hadley/private", auth_token = "abc")

# To pass option arguments to `R CMD INSTALL` use `INSTALL_opts`. e.g. to
install a package with source references and tests
install_github("rstudio/shiny", INSTALL_opts = c("--with-keep.source", "--install-tests"))

## End(Not run)

Install a package from GitLab

Description

This function is vectorised on repo so you can install multiple packages in a single command. Like other remotes the repository will skip installation if force == FALSE (the default) and the remote state has not changed since the previous installation.

Usage

install_gitlab(
  repo,
  subdir = NULL,
  auth_token = gitlab_pat(quiet),
  host = "gitlab.com",
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)
install_gitlab(
  repo,
  subdir = NULL,
  auth_token = gitlab_pat(quiet),
  host = "gitlab.com",
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)

Arguments

`repo`	Repository address in the format `⁠username/repo[@ref]⁠`.
`subdir`	Subdirectory within repo that contains the R package.
`auth_token`	To install from a private repo, generate a personal access token (PAT) with at least read_api scope in https://docs.gitlab.com/ee/user/profile/personal_access_tokens.html and supply to this argument. This is safer than using a password because you can easily delete a PAT without affecting any others. Defaults to the GITLAB_PAT environment variable.
`host`	GitLab API host to use. Override with your GitLab enterprise hostname, for example, `"<PROTOCOL://>gitlab.hostname.com"`. The PROTOCOL is required by packrat during RStudio Connect deployment. While install_gitlab may work without, omitting it generally leads to package restoration errors.
`dependencies`	Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector. `TRUE` is shorthand for "Depends", "Imports", "LinkingTo" and "Suggests". `NA` is shorthand for "Depends", "Imports" and "LinkingTo" and is the default. `FALSE` is shorthand for no dependencies (i.e. just check this package, not its dependencies). The value "soft" means the same as `TRUE`, "hard" means the same as `NA`. You can also specify dependencies from one or more additional fields, common ones include: Config/Needs/website - for dependencies used in building the pkgdown site. Config/Needs/coverage for dependencies used in calculating test coverage.
`upgrade`	Should package dependencies be upgraded? One of "default", "ask", "always", or "never". "default" respects the value of the `R_REMOTES_UPGRADE` environment variable if set, and falls back to "ask" if unset. "ask" prompts the user for which out of date packages to upgrade. For non-interactive sessions "ask" is equivalent to "always". `TRUE` and `FALSE` are also accepted and correspond to "always" and "never" respectively.
`force`	Force installation, even if the remote state has not changed since the previous install.
`quiet`	If `TRUE`, suppress output.
`build`	If `TRUE` build the package before installing.
`build_opts`	Options to pass to `⁠R CMD build⁠`, only used when `build` is `TRUE`.
`build_manual`	If `FALSE`, don't build PDF manual ('–no-manual').
`build_vignettes`	If `FALSE`, don't build package vignettes ('–no-build-vignettes').
`repos`	A character vector giving repositories to use.
`type`	Type of package to `update`.
`...`	Other arguments passed on to `utils::install.packages()`.

Examples

## Not run: 
install_gitlab("jimhester/covr")

## End(Not run)
## Not run: 
install_gitlab("jimhester/covr")

## End(Not run)

Install a package from a local file

Description

This function is vectorised so you can install multiple packages in a single command.

Usage

install_local(
  path = ".",
  subdir = NULL,
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = !is_binary_pkg(path),
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)
install_local(
  path = ".",
  subdir = NULL,
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = !is_binary_pkg(path),
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)

Arguments

`path`	path to local directory, or compressed file (tar, zip, tar.gz tar.bz2, tgz2 or tbz)
`subdir`	subdirectory within url bundle that contains the R package.
`dependencies`	Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector. `TRUE` is shorthand for "Depends", "Imports", "LinkingTo" and "Suggests". `NA` is shorthand for "Depends", "Imports" and "LinkingTo" and is the default. `FALSE` is shorthand for no dependencies (i.e. just check this package, not its dependencies). The value "soft" means the same as `TRUE`, "hard" means the same as `NA`. You can also specify dependencies from one or more additional fields, common ones include: Config/Needs/website - for dependencies used in building the pkgdown site. Config/Needs/coverage for dependencies used in calculating test coverage.
`upgrade`	Should package dependencies be upgraded? One of "default", "ask", "always", or "never". "default" respects the value of the `R_REMOTES_UPGRADE` environment variable if set, and falls back to "ask" if unset. "ask" prompts the user for which out of date packages to upgrade. For non-interactive sessions "ask" is equivalent to "always". `TRUE` and `FALSE` are also accepted and correspond to "always" and "never" respectively.
`force`	Force installation, even if the remote state has not changed since the previous install.
`quiet`	If `TRUE`, suppress output.
`build`	If `TRUE` build the package before installing.
`build_opts`	Options to pass to `⁠R CMD build⁠`, only used when `build` is `TRUE`.
`build_manual`	If `FALSE`, don't build PDF manual ('–no-manual').
`build_vignettes`	If `FALSE`, don't build package vignettes ('–no-build-vignettes').
`repos`	A character vector giving repositories to use.
`type`	Type of package to `update`.
`...`	Other arguments passed on to `utils::install.packages()`.

Examples

## Not run: 
dir <- tempfile()
dir.create(dir)
pkg <- download.packages("testthat", dir, type = "source")
install_local(pkg[, 2])

## End(Not run)
## Not run: 
dir <- tempfile()
dir.create(dir)
pkg <- download.packages("testthat", dir, type = "source")
install_local(pkg[, 2])

## End(Not run)

Install a package from a SVN repository

Description

This function requires svn to be installed on your system in order to be used.

Usage

install_svn(
  url,
  subdir = NULL,
  args = character(0),
  revision = NULL,
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)
install_svn(
  url,
  subdir = NULL,
  args = character(0),
  revision = NULL,
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)

Arguments

`url`	Location of package. The url should point to a public or private repository.
`subdir`	A sub-directory within a svn repository that contains the package we are interested in installing.
`args`	A character vector providing extra options to pass on to `svn`.
`revision`	svn revision, if omitted updates to latest
`dependencies`	Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector. `TRUE` is shorthand for "Depends", "Imports", "LinkingTo" and "Suggests". `NA` is shorthand for "Depends", "Imports" and "LinkingTo" and is the default. `FALSE` is shorthand for no dependencies (i.e. just check this package, not its dependencies). The value "soft" means the same as `TRUE`, "hard" means the same as `NA`. You can also specify dependencies from one or more additional fields, common ones include: Config/Needs/website - for dependencies used in building the pkgdown site. Config/Needs/coverage for dependencies used in calculating test coverage.
`upgrade`	Should package dependencies be upgraded? One of "default", "ask", "always", or "never". "default" respects the value of the `R_REMOTES_UPGRADE` environment variable if set, and falls back to "ask" if unset. "ask" prompts the user for which out of date packages to upgrade. For non-interactive sessions "ask" is equivalent to "always". `TRUE` and `FALSE` are also accepted and correspond to "always" and "never" respectively.
`force`	Force installation, even if the remote state has not changed since the previous install.
`quiet`	If `TRUE`, suppress output.
`build`	If `TRUE` build the package before installing.
`build_opts`	Options to pass to `⁠R CMD build⁠`, only used when `build` is `TRUE`.
`build_manual`	If `FALSE`, don't build PDF manual ('–no-manual').
`build_vignettes`	If `FALSE`, don't build package vignettes ('–no-build-vignettes').
`repos`	A character vector giving repositories to use.
`type`	Type of package to `update`.
`...`	Other arguments passed on to `utils::install.packages()`.

Details

It is vectorised so you can install multiple packages with a single command.

Examples

## Not run: 
install_svn("https://github.com/hadley/stringr/trunk")
install_svn("https://github.com/hadley/httr/branches/oauth")

## End(Not run)
## Not run: 
install_svn("https://github.com/hadley/stringr/trunk")
install_svn("https://github.com/hadley/httr/branches/oauth")

## End(Not run)

Install a package from a url

Description

This function is vectorised so you can install multiple packages in a single command.

Usage

install_url(
  url,
  subdir = NULL,
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)
install_url(
  url,
  subdir = NULL,
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)

Arguments

`url`	location of package on internet. The url should point to a zip file, a tar file or a bzipped/gzipped tar file.
`subdir`	subdirectory within url bundle that contains the R package.
`dependencies`	Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector. `TRUE` is shorthand for "Depends", "Imports", "LinkingTo" and "Suggests". `NA` is shorthand for "Depends", "Imports" and "LinkingTo" and is the default. `FALSE` is shorthand for no dependencies (i.e. just check this package, not its dependencies). The value "soft" means the same as `TRUE`, "hard" means the same as `NA`. You can also specify dependencies from one or more additional fields, common ones include: Config/Needs/website - for dependencies used in building the pkgdown site. Config/Needs/coverage for dependencies used in calculating test coverage.
`upgrade`	Should package dependencies be upgraded? One of "default", "ask", "always", or "never". "default" respects the value of the `R_REMOTES_UPGRADE` environment variable if set, and falls back to "ask" if unset. "ask" prompts the user for which out of date packages to upgrade. For non-interactive sessions "ask" is equivalent to "always". `TRUE` and `FALSE` are also accepted and correspond to "always" and "never" respectively.
`force`	Force installation, even if the remote state has not changed since the previous install.
`quiet`	If `TRUE`, suppress output.
`build`	If `TRUE` build the package before installing.
`build_opts`	Options to pass to `⁠R CMD build⁠`, only used when `build` is `TRUE`.
`build_manual`	If `FALSE`, don't build PDF manual ('–no-manual').
`build_vignettes`	If `FALSE`, don't build package vignettes ('–no-build-vignettes').
`repos`	A character vector giving repositories to use.
`type`	Type of package to `update`.
`...`	Other arguments passed on to `utils::install.packages()`.

Examples

## Not run: 
install_url("https://github.com/hadley/stringr/archive/HEAD.zip")

## End(Not run)
## Not run: 
install_url("https://github.com/hadley/stringr/archive/HEAD.zip")

## End(Not run)

Install specific version of a package.

Description

This function knows how to look in multiple CRAN-like package repositories, and in their archive directories, in order to find specific versions of the requested package.

Usage

install_version(
  package,
  version = NULL,
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = FALSE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = "source",
  ...
)
install_version(
  package,
  version = NULL,
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = FALSE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = "source",
  ...
)

Arguments

`package`	Name of the package to install.
`version`	Version of the package to install. Can either be a string giving the exact version required, or a specification in the same format as the parenthesized expressions used in package dependencies. One of the following formats: An exact version required, as a string, e.g. `"0.1.13"` A comparison operator and a version, e.g. `">= 0.1.12"` Several criteria to satisfy, as a comma-separated string, e.g. `">= 1.12.0, < 1.14"` Several criteria to satisfy, as elements of a character vector, e.g. `c(">= 1.12.0", "< 1.14")`
`dependencies`	logical indicating whether to also install uninstalled packages which these packages depend on/link to/import/suggest (and so on recursively). Not used if `repos = NULL`. Can also be a character vector, a subset of `c("Depends", "Imports", "LinkingTo", "Suggests", "Enhances")`. Only supported if `lib` is of length one (or missing), so it is unambiguous where to install the dependent packages. If this is not the case it is ignored, with a warning. The default, `NA`, means `c("Depends", "Imports", "LinkingTo")`. `TRUE` means to use `c("Depends", "Imports", "LinkingTo", "Suggests")` for `pkgs` and `c("Depends", "Imports", "LinkingTo")` for added dependencies: this installs all the packages needed to run `pkgs`, their examples, tests and vignettes (if the package author specified them correctly). In all of these, `"LinkingTo"` is omitted for binary packages.
`upgrade`	Should package dependencies be upgraded? One of "default", "ask", "always", or "never". "default" respects the value of the `R_REMOTES_UPGRADE` environment variable if set, and falls back to "ask" if unset. "ask" prompts the user for which out of date packages to upgrade. For non-interactive sessions "ask" is equivalent to "always". `TRUE` and `FALSE` are also accepted and correspond to "always" and "never" respectively.
`force`	Force installation, even if the remote state has not changed since the previous install.
`quiet`	logical: if true, reduce the amount of output. This is not passed to `available.packages()` in case that is called, on purpose.
`build`	If `TRUE` build the package before installing.
`build_opts`	Options to pass to `⁠R CMD build⁠`, only used when `build` is `TRUE`.
`build_manual`	If `FALSE`, don't build PDF manual ('–no-manual').
`build_vignettes`	If `FALSE`, don't build package vignettes ('–no-build-vignettes').
`repos`	character vector, the base URL(s) of the repositories to use, e.g., the URL of a CRAN mirror such as `"https://cloud.r-project.org"`. For more details on supported URL schemes see `url`. Can be `NULL` to install from local files, directories or URLs: this will be inferred by extension from `pkgs` if of length one.
`type`	character, indicating the type of package to download and install. Will be `"source"` except on Windows and some macOS builds: see the section on ‘Binary packages’ for those.
`...`	Other arguments passed on to `utils::install.packages()`.

Details

The repositories are searched in the order specified by the repos argument. This enables teams to maintain multiple in-house repositories with different policies - for instance, one repo for development snapshots and one for official releases. A common setup would be to first search the official release repo, then the dev snapshot repo, then a public CRAN mirror.

Older versions of packages on CRAN are usually only available in source form. If your requested package contains compiled code, you will need to have an R development environment installed. You can check if you do by running devtools::has_devel (you need the devtools package for this).

Examples

## Not run: 
install_version("devtools", "1.11.0")
install_version("devtools", ">= 1.12.0, < 1.14")

## Specify search order (e.g. in ~/.Rprofile)
options(repos = c(
  prod = "http://mycompany.example.com/r-repo",
  dev = "http://mycompany.example.com/r-repo-dev",
  CRAN = "https://cran.revolutionanalytics.com"
))
install_version("mypackage", "1.15") # finds in 'prod'
install_version("mypackage", "1.16-39487") # finds in 'dev'

## End(Not run)
## Not run: 
install_version("devtools", "1.11.0")
install_version("devtools", ">= 1.12.0, < 1.14")

## Specify search order (e.g. in ~/.Rprofile)
options(repos = c(
  prod = "http://mycompany.example.com/r-repo",
  dev = "http://mycompany.example.com/r-repo-dev",
  CRAN = "https://cran.revolutionanalytics.com"
))
install_version("mypackage", "1.15") # finds in 'prod'
install_version("mypackage", "1.16-39487") # finds in 'dev'

## End(Not run)

Find all dependencies of a CRAN or dev package.

Description

Find all the dependencies of a package and determine whether they are ahead or behind CRAN. A print() method identifies mismatches (if any) between local and CRAN versions of each dependent package; an update() method installs outdated or missing packages from CRAN.

Usage

package_deps(
  packages,
  dependencies = NA,
  repos = getOption("repos"),
  type = getOption("pkgType")
)

local_package_deps(pkgdir = ".", dependencies = NA)

dev_package_deps(
  pkgdir = ".",
  dependencies = NA,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  remote_precedence = TRUE
)

## S3 method for class 'package_deps'
update(
  object,
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)
package_deps(
  packages,
  dependencies = NA,
  repos = getOption("repos"),
  type = getOption("pkgType")
)

local_package_deps(pkgdir = ".", dependencies = NA)

dev_package_deps(
  pkgdir = ".",
  dependencies = NA,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  remote_precedence = TRUE
)

## S3 method for class 'package_deps'
update(
  object,
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)

Arguments

`packages`	A character vector of package names.
`dependencies`	Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector. `TRUE` is shorthand for "Depends", "Imports", "LinkingTo" and "Suggests". `NA` is shorthand for "Depends", "Imports" and "LinkingTo" and is the default. `FALSE` is shorthand for no dependencies (i.e. just check this package, not its dependencies). The value "soft" means the same as `TRUE`, "hard" means the same as `NA`. You can also specify dependencies from one or more additional fields, common ones include: Config/Needs/website - for dependencies used in building the pkgdown site. Config/Needs/coverage for dependencies used in calculating test coverage.
`repos`	A character vector giving repositories to use.
`type`	Type of package to `update`.
`pkgdir`	Path to a package directory, or to a package tarball.
`remote_precedence`	A logical flag specifying whether remote sources should take precedence over CRAN when both were found.
`object`	A `package_deps` object.
`upgrade`	Should package dependencies be upgraded? One of "default", "ask", "always", or "never". "default" respects the value of the `R_REMOTES_UPGRADE` environment variable if set, and falls back to "ask" if unset. "ask" prompts the user for which out of date packages to upgrade. For non-interactive sessions "ask" is equivalent to "always". `TRUE` and `FALSE` are also accepted and correspond to "always" and "never" respectively.
`force`	Force installation, even if the remote state has not changed since the previous install.
`quiet`	If `TRUE`, suppress output.
`build`	If `TRUE` build the package before installing.
`build_opts`	Options to pass to `⁠R CMD build⁠`, only used when `build` is `TRUE`.
`build_manual`	If `FALSE`, don't build PDF manual ('–no-manual').
`build_vignettes`	If `FALSE`, don't build package vignettes ('–no-build-vignettes').
`...`	Additional arguments passed to `install_packages`.

Value

A data.frame with columns:

`package`	The dependent package's name,
`installed`	The currently installed version,
`available`	The version available on CRAN,
`diff`	An integer denoting whether the locally installed version of the package is newer (1), the same (0) or older (-1) than the version currently available on CRAN.

Examples

## Not run: 
package_deps("devtools")
# Use update to update any out-of-date dependencies
update(package_deps("devtools"))

## End(Not run)
## Not run: 
package_deps("devtools")
# Use update to update any out-of-date dependencies
update(package_deps("devtools"))

## End(Not run)

Parse a remote git repo specification

Description

A remote repo can be specified in two ways:

as a URL: parse_github_url() handles HTTPS and SSH remote URLs and various GitHub browser URLs
via a shorthand: parse_repo_spec() handles this concise form: ⁠[username/]repo[/subdir][#pull|@ref|@*release]⁠

Usage

parse_repo_spec(repo)

parse_github_repo_spec(repo)

parse_github_url(repo)
parse_repo_spec(repo)

parse_github_repo_spec(repo)

parse_github_url(repo)

Arguments

repo

Character scalar, the repo specification.

Value

List with members: username, repo, subdir ref, pull, release, some which will be empty.

Examples

parse_repo_spec("metacran/crandb")
parse_repo_spec("jimhester/covr#47")        ## pull request
parse_repo_spec("jeroen/[email protected]")       ## specific tag
parse_repo_spec("tidyverse/dplyr@*release") ## shorthand for latest release
parse_repo_spec("r-lib/remotes@550a3c7d3f9e1493a2ba") ## commit SHA
parse_repo_spec("igraph=igraph/rigraph") ## Different package name from repo name

parse_github_url("https://github.com/jeroen/curl.git")
parse_github_url("[email protected]:metacran/crandb.git")
parse_github_url("https://github.com/jimhester/covr")
parse_github_url("https://github.example.com/user/repo.git")
parse_github_url("[email protected]:user/repo.git")

parse_github_url("https://github.com/r-lib/remotes/pull/108")
parse_github_url("https://github.com/r-lib/remotes/tree/name-of-branch")
parse_github_url("https://github.com/r-lib/remotes/commit/1234567")
parse_github_url("https://github.com/r-lib/remotes/releases/latest")
parse_github_url("https://github.com/r-lib/remotes/releases/tag/1.0.0")
parse_repo_spec("metacran/crandb")
parse_repo_spec("jimhester/covr#47")        ## pull request
parse_repo_spec("jeroen/[email protected]")       ## specific tag
parse_repo_spec("tidyverse/dplyr@*release") ## shorthand for latest release
parse_repo_spec("r-lib/remotes@550a3c7d3f9e1493a2ba") ## commit SHA
parse_repo_spec("igraph=igraph/rigraph") ## Different package name from repo name

parse_github_url("https://github.com/jeroen/curl.git")
parse_github_url("[email protected]:metacran/crandb.git")
parse_github_url("https://github.com/jimhester/covr")
parse_github_url("https://github.example.com/user/repo.git")
parse_github_url("[email protected]:user/repo.git")

parse_github_url("https://github.com/r-lib/remotes/pull/108")
parse_github_url("https://github.com/r-lib/remotes/tree/name-of-branch")
parse_github_url("https://github.com/r-lib/remotes/commit/1234567")
parse_github_url("https://github.com/r-lib/remotes/releases/latest")
parse_github_url("https://github.com/r-lib/remotes/releases/tag/1.0.0")

Query the system requirements for a package (and its dependencies)

Description

Returns a character vector of commands to run that will install system requirements for the queried operating system.

Usage

system_requirements(
  os,
  os_release = NULL,
  path = ".",
  package = NULL,
  curl = Sys.which("curl")
)
system_requirements(
  os,
  os_release = NULL,
  path = ".",
  package = NULL,
  curl = Sys.which("curl")
)

Arguments

`os`, `os_release`	The operating system and operating system release version, see https://github.com/rstudio/r-system-requirements#operating-systems for the list of supported operating systems. If `os_release` is `NULL`, `os` must consist of the operating system and the version separated by a dash, e.g. `"ubuntu-18.04"`.
`path`	The path to the dev package's root directory.
`package`	CRAN package name(s) to lookup system requirements for. If not `NULL`, this is used and `path` is ignored.
`curl`	The location of the curl binary on your system.

Value

A character vector of commands needed to install the system requirements for the package.

Update packages that are missing or out-of-date.

Description

Works similarly to utils::install.packages() but doesn't install packages that are already installed, and also upgrades out dated dependencies.

Usage

update_packages(
  packages = TRUE,
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)
update_packages(
  packages = TRUE,
  dependencies = NA,
  upgrade = c("default", "ask", "always", "never"),
  force = FALSE,
  quiet = FALSE,
  build = TRUE,
  build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
  build_manual = FALSE,
  build_vignettes = FALSE,
  repos = getOption("repos"),
  type = getOption("pkgType"),
  ...
)

Arguments

`packages`	Character vector of packages to update.
`dependencies`	Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector. `TRUE` is shorthand for "Depends", "Imports", "LinkingTo" and "Suggests". `NA` is shorthand for "Depends", "Imports" and "LinkingTo" and is the default. `FALSE` is shorthand for no dependencies (i.e. just check this package, not its dependencies). The value "soft" means the same as `TRUE`, "hard" means the same as `NA`. You can also specify dependencies from one or more additional fields, common ones include: Config/Needs/website - for dependencies used in building the pkgdown site. Config/Needs/coverage for dependencies used in calculating test coverage.
`upgrade`	Should package dependencies be upgraded? One of "default", "ask", "always", or "never". "default" respects the value of the `R_REMOTES_UPGRADE` environment variable if set, and falls back to "ask" if unset. "ask" prompts the user for which out of date packages to upgrade. For non-interactive sessions "ask" is equivalent to "always". `TRUE` and `FALSE` are also accepted and correspond to "always" and "never" respectively.
`force`	Deprecated, this argument has no effect.
`quiet`	If `TRUE`, suppress output.
`build`	If `TRUE` build the package before installing.
`build_opts`	Options to pass to `⁠R CMD build⁠`, only used when `build` is `TRUE`.
`build_manual`	If `FALSE`, don't build PDF manual ('–no-manual').
`build_vignettes`	If `FALSE`, don't build package vignettes ('–no-build-vignettes').
`repos`	A character vector giving repositories to use.
`type`	Type of package to `update`.
`...`	Other arguments passed on to `utils::install.packages()`.

Examples

## Not run: 
update_packages("ggplot2")
update_packages(c("plyr", "ggplot2"))

## End(Not run)
## Not run: 
update_packages("ggplot2")
update_packages(c("plyr", "ggplot2"))

## End(Not run)

Package 'remotes'

Help Index

Download a specified version of a CRAN package

Description

Usage

Arguments

Value

GitHub references

Description

Usage

Arguments

See Also

Examples

Install a development package from the Bioconductor git repository

Description

Usage

Arguments

Details

See Also

Examples

Install a package directly from Bitbucket

Description

Usage

Arguments

Details

See Also

Examples

Attempts to install a package from CRAN.

Description

Usage

Arguments

See Also

Examples

Install package dependencies if needed.

Description

Usage

Arguments

Examples

Install the development version of a package

Description

Usage

Arguments

See Also

Examples

Install a package from a git repository

Description

Usage

Arguments

Details

See Also

Examples

Attempts to install a package directly from GitHub.

Description

Usage

Arguments

Details

See Also

Examples

Install a package from GitLab

Description

Usage

Arguments

See Also

Examples

Install a package from a local file

Description

Usage

Arguments

See Also

Examples

Install a package from a SVN repository

Description

Usage

Arguments

Details

See Also

Examples

Install a package from a url

Description

Usage